PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919839
Common NameARALYDRAFT_919839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 287aa    MW: 32203.2 Da    PI: 7.7538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919839genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19115164255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
              y+GVr++  +g+WvAeIr p++   r+r +lg+f ta+eAa a+++a+ k++g
  919839 115 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAQEAALAYDQAAHKIRG 164
             59****999.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-33114173No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32115173IPR001471AP2/ERF domain
SMARTSM003803.0E-35115178IPR001471AP2/ERF domain
PROSITE profilePS5103222.8115172IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22115173IPR016177DNA-binding domain
PfamPF008473.5E-13116164IPR001471AP2/ERF domain
PRINTSPR003676.9E-11116127IPR001471AP2/ERF domain
PRINTSPR003676.9E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAMALNMNGY IDEFTKALEP FMKVTSSSSS SSSSSYSFSS NPKTLTTNNN NQALPESNQT  60
GPIGLNQLTP TQILQIQTEL HLRQNQPRRR AGSHLLTTKP TLMKKTDVAA KPVKLYRGVR  120
QRQWGKWVAE IRLPKNRTRL WLGTFETAQE AALAYDQAAH KIRGDNARLN FPDIARQGHY  180
KHTLSPSINA KIDSICHSSD LPLPQLRKQN KTEEVLSAFH YTGHEPEQEP EFGEIYGSGF  240
SGSSPESDIT LLDFSSDCMK EDESFLMGLH KYPSLEIDWD AIEKLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22114172160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608580.0AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471090.0DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864941.10.0hypothetical protein ARALYDRAFT_919839
SwissprotQ9FJQ21e-173ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLD7MT810.0D7MT81_ARALL; Putative uncharacterized protein
STRINGscaffold_803239.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-139ERF family protein